Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| CESC | rs34243225 | chr7:135207451 | G/A | 6.9E-5 | 216 | 17.07 | 13.22 | 12.83 | KM Plot |
| CESC | rs34463645 | chr22:21941164 | CTT/C | 5.84E-5 | 223 | 15.7 | 11.78 | 7.57 | KM Plot |
| CESC | rs34596781 | chr7:135213315 | AG/A | 6.93E-5 | 215 | 17.07 | 13.67 | 12.83 | KM Plot |
| CESC | rs34743458 | chr16:1872031 | A/G | 4.58E-5 | 224 | 13.8 | 15.17 | 6.02 | KM Plot |
| CESC | rs34744947 | chr11:122337966 | G/GA | 0 | 220 | 0.47 | 4.87 | 14.48 | KM Plot |
| CESC | rs35044461 | chr7:65536601 | G/GT | 7.63E-7 | 219 | 14.27 | 13.12 | 4.92 | KM Plot |
| CESC | rs35216968 | chr16:1872017 | G/A | 4.58E-5 | 224 | 13.8 | 15.17 | 6.02 | KM Plot |
| CESC | rs35435342 | chr19:50505840 | T/C | 3.44E-5 | 219 | 13.95 | 14.6 | 8.4 | KM Plot |
| CESC | rs35916850 | chr17:29011173 | G/A | 0 | 220 | 14.1 | 10.2 | 1.23 | KM Plot |
| CESC | rs3731525 | chr3:48213838 | C/T | 2.14E-13 | 224 | 3.33 | 13.03 | 14.1 | KM Plot |
| CESC | rs41534946 | chr4:113079122 | C/T | 2.89E-5 | 224 | 14.7 | 12.6 | 11.6 | KM Plot |
| CESC | rs4269999 | chr12:87757324 | A/G | 2.13E-10 | 224 | 2.05 | 16.83 | 14.08 | KM Plot |
| CESC | rs4717368 | chr7:66796667 | T/C | 3.83E-5 | 219 | 13.45 | 20.5 | 7.18 | KM Plot |
| CESC | rs4821104 | chr22:21950405 | A/G | 6.02E-5 | 223 | 15.3 | 12.83 | 7.57 | KM Plot |
| CESC | rs4821114 | chr22:21970810 | G/C | 4.87E-5 | 223 | 14.9 | 13.3 | 7.57 | KM Plot |